Wit!P Tutorial (Index)


This is the starting point of the Wit!P Tutorial. The tutorial is organized as a linear thread, with a link to the next topic at the end of each page. You may use the following index to jump to a specific topic:
 
get started start Wit!P client and graphics server
read a PDB file read in a file from the protein database
play with it use the mouse and keyboard commands to manipulate the display
rotations etc. rotations and translations using mouse and keyboard
molecules and trees important things to know about the hierarchical organization of molecular data
selecting atoms learn how to name individual atoms and groups of atoms (atomselections)
measuring measure distances, angles, dihedrals,...
monitoring distance monitoring
copy, move, merge manipulate the molecular data tree, manual docking of inhibitor
minimization setup prepare a protein/ligand complex for energy minimization
run minimization run a constrained energy minimization of a protein ligand complex
LMOD Tutorial prepare protein/ligand complex for Macromodel/LMOD calculation



A.Widmer, NIBR/CPC/CSG-SB